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Services Help Pages
  • BCSearch
  • FAF-Drugs4
  • fpocket
  • Frog2
  • HHalign-Kbest
  • InterEvDock2
  • MTiAutoDock/MTiOpenScreen
  • PatchSearch
  • Proteo3Dnet
  • PCE
  • PEP-FOLD
  • PEP-FOLD3
  • PEP-SiteFinder
  • pepATTRACT
  • SABBAC
  • SAFrag
  • SolyPep
  • Yakusa
  • Welcome
  • Forms
  • Data Bookmarks
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  • Tutorials

Welcome to Mobyle, a portal for bioinformatics analyses

10/19/2023 Warning: The following services are permanently moved to our new web portal: Bank-Formatter, FAF-Drugs4, Frog2, MTiAutoDock, MTiOpenScreen, PEP-FOLD4, PepiT, ProPHet.
07/17/2023 Warning: On July 26th, the Mobyle portal will be unreachable for electric power supply maintenance starting from 4:00pm GMT+1. Expected downtime of 48 hours but may be subject to extension. We are sorry for any inconvenience.
05/17/2022 Warning: Our servers are in the process of being migrated to a new architecture. Longer computation time are expected. Jobs older than a few days will be killed.
08/04/2021 Warning: On August 12th, the Mobyle portal will be unreachable for electric power supply maintenance starting from 8:00am GMT+1. Expected downtime of 24 hours but may be subject to extension. We are sorry for any inconvenience.
07/07/2021 InterEvDock3: now published in Nucleic Acids Research.
07/07/2021 Proteo3Dnet: now published in Nucleic Acids Research.
03/24/2021 Warning: Storage server problems are affecting all services. We are sorry for any inconvenience.
01/01/2021 InterEvDock3: New version of the InterEvDock service now on-line. Embedds both comparative and updated free modeling.
08/06/2020 Warning: On August 12-13th, the Mobyle portal will be unreachable for electric power supply maintenance starting from 8:00am GMT+1. Expected downtime of 24 hours but may be subject to extension. We are sorry for any inconvenience.
03/11/2020 Warning: On March 13th-15th, the Mobyle portal will be unreachable for network maintenance starting from 4:00pm GMT+1. We are sorry for any inconvenience.
12/05/2019 Proteo3Dnet enhanced by connection to ELM and better on-line interactive graph exploration.
09/11/2019 End of service interruption following electric power supply failure. We are sorry for any inconvenience.
08/05/2019 End of service interruption following server malfunction. We are sorry for any inconvenience.
07/22/2019 Warning: On August 12-13th, the Mobyle portal will be unreachable for electric power supply maintenance starting from 8:00am GMT+1. Expected downtime of 48 hours but may be subject to extension. We are sorry for any inconvenience.
07/07/2019 Proteo3Dnet (formerly MS2MODELS), a service dedicated to probing protein interaction networks by proteomics and structural data integration, is now available.
05/29/2019 End of service interruption following server maintenance. We are sorry for any inconvenience.
05/24/2019 Warning: On May 27th, the Mobyle portal will be unreachable for server maintenance starting from 10:00am GMT+1. We are sorry for any inconvenience.
05/06/2019 Jupyter training session, June 5-6th, at RPBS.
04/04/2019 DaReUS-Loop, a service dedicated to the modeling of loops in homology models, is now available.
04/04/2019 PEP-Cyclizer, a service dedicated to the design of head-to-tail peptide cyclization, is now available.
12/04/2018 End of service interruption following storage system failure. We are sorry for any inconvenience.
08/18/2018 End of service interruption following electric power supply maintenance. We are sorry for any inconvenience.
02/26/2018 PatchSearch, a service dedicated to the identification of structurally conserved regions at the protein surfaces, is now available.
02/26/2018 InterEvDock2, a service dedicated to the blind modeling of protein-protein complexes, is now available.
10/17/2017 Bugfix: Spurious bug affecting all services may have lead to unusual status code ( 1 ) return. Quick correction setup. We are sorry for any inconvenience.
10/17/2017 Warning: On October 18th, the Mobyle portal will be unreachable for server maintenance starting from 10:00am GMT+1. We are sorry for any inconvenience.
06/27/2017 Warning: On June 27th, the Mobyle portal will be unreachable for server maintenance starting from 10:00am GMT+1 to 12:00pm GMT+1. We are sorry for any inconvenience.
04/26/2017 FAF-Drugs, version 4, is now available.
03/02/2017 Note: It is no longer possible to run more than one PepBasic3D job at once.
03/02/2017 Warning: On March 8th, the Mobyle portal will be unreachable for network maintenance starting from 10:00am GMT+1 to 12:00pm GMT+1.
03/02/2017 pepATTRACT, a service dedicated to the blind docking of peptide on protein, is now available.
03/02/2017 ProPHet, a service dedicated to computation of protein local rigidity on the residue level, is now available.
02/24/2017 Note: It is no longer possible to run more than one MTiOpenScreen job at once. Please do NOT try to submit more than one job at a time.
12/20/2016 Warning: The MTiOpenScreen service has been temporarily disabled due to a too large number of submissions overloading the cluster. We apologize for any inconvenience.
09/15/2016 Warning: The Mobyle server may encounter issues during next week (September 19th - September 23rd) due to data storage server upgrade. We are sorry for any inconvenience.
07/25/2016 Warning: The Mobyle portal will be unreachable for electric power supply maintenance from July 28th 4:00pm GMT+1 to August 1st 11:00am GMT+1. We are sorry for any inconvenience.
05/20/2016 Warning: On May 25th, the Mobyle portal will be unreachable for network maintenance starting from 12:00pm GMT+1 to 1:00pm GMT+1.
04/15/2016 Warning: On April 21st, the Mobyle portal will be unreachable for electric power supply maintenance starting from 5:00pm GMT+1 to April 22nd 12:00pm GMT+1.
04/08/2016 Warning: On April 20th, the Mobyle portal will be unreachable for server maintenance starting from 10:30am GMT+1.
03/10/2016 Warning: On March 10th, the Mobyle portal will be unreachable for server maintenance starting from 10:00am GMT+1.
02/24/2016 End of service interruption following server malfunction (1:30pm GMT+1). We are sorry for any inconvenience.
02/12/2016 Back to normal service availability
02/11/2016 End of service interruption following major (unexpected) intervention of electric power supply on February 10th. We apologize for any inconvenience.
12/17/2015 PEP-FOLD3, an update of PEP-FOLD able to model peptides from 5 to 50 amino acids and to generate peptide protein complexes, is now available.
12/12/2015 InterEvDock, a service dedicated to blind modeling of protein-protein complexes, is now available.
10/21/2015 Warning: On October 5th, the Mobyle portal will be unreachable for a short period maintenance starting from 10:00 am GMT+1.
07/29/2015 Warning: On August 5th, the Mobyle portal will be unreachable for electric power supply maintenance.
07/28/2015 Integration of 2 WebGL based viewers for PDB files : PV & NGL Viewer. Java applet based viewers Jmol and OpenAstex will be kept for some more time.
07/23/2015 Bug fix: HHAlign-Kbest crash bug with large sequences is now fixed.
07/21/2015 Warning: Spurious bug affecting HHAlign-Kbest, to be fixed very soon. We apologize for any inconvenience.
07/08/2015 JSDraw, a javascript based molecule editor, is now available. Former java applets editors have been removed.
06/30/2015 Warning: On July 1st, the Mobyle portal will be unreachable starting from 11:00 am GMT+1 for server maintenance.
06/17/2015 Bug fix: FASTA sequence loading from pdbaa database has been fixed.
06/10/2015 Warning: On June 10th, the Mobyle portal will be unreachable from 2:00 pm GMT+1 for a very short maintenance.
05/19/2015 End of service interruption following server malfunction.
05/18/2015 Warning: All Mobyle-legacy services (@rpbs) are deactivated following server malfunction. We are sorry for any inconvenience.
04/15/2015 Bug fix: Page refresh on job termination should work better.
03/30/2015 Warning: Services migration still ongoing. Sorry for some mismatch between new and old Mobyle portals.
03/30/2015 Warning: On march 30th, the Mobyle portal will be unreachable from 10:30 GMT+1 for migration to new backend architecture. Estimated downtime is 1 hour. All running jobs and unsaved data will be lost in the process.
02/28/2015 BCSpecificitySearch, a 4th service dedicated to mining collections of protein structures to identity fragments similar to a query, is now available.
01/27/2015 End of service interruption following network problems.
01/19/2015 BCFragSearch, BCLoopSearch and BCMirrorSearch, 3 services to mine collections of protein structures to identify fragments similar to a query, are now available.
01/21/2015 End of service interruption following server maintenance.
01/21/2015 Warning: On January 21st, the Mobyle portal will be unreachable from 2:00 pm up to 4:00 pm GMT+1 for maintenance.
11/12/2014 MTiAutoDock and MTiOpenScreen, 2 services to screen small compound onto a target protein, now open to all.
11/16/2014 BactPepDB, a database of peptides predicted from bacteria genomes, is now available here.
11/13/2014 HHalign-Kbest, a service for homology comparative modelling using sub-optimal alignments, is now available.
11/01/2014 GLSearch superseded by BCSearch, a service to mine collections of protein structures to identify fragments similar to a query.
08/05/2014 Warning: On August 20th, the Mobyle portal will be unreachable from 8:00 am up to 3:00 pm GMT+1 for electric power supply maintenance.
06/30/2014 Warning: From June 29th to June 30th, a problem occured with fileserver with services never returning results. We are sorry for any inconvenience.
06/06/2014 Bug fix: Spurious bug affecting PEP-FOLD and PEP-SiteFinder identified. Quick correction setup.
05/16/2014 LigAutoDock, a tutorial service for the rigid docking of ONE small compound on protein structure, is now available for testing.
05/12/2014 Warning: The Mobyle portal was unreachable from May 8th to May 12th due to fileserver malfunction. We are sorry for any inconvenience.
04/08/2014 Mobyle@RPBS updated to 1.5.3.
03/19/2014 Frog2: minor bug fix. Service reopened to all.
02/21/2014 Warning: On February 21st, the Mobyle portal will be unreachable between 8:00 to 10:00 am GMT+1 due to network operations.
01/14/2014 Warning: On January 9-14th, some services (e.g. PEP-SiteFinder) have been affected due to a core calculation ressource spurious behavior which resulted in very slow processing. The problem has been solved on January 14th.
12/18/2013 Bug fix: page refresh on job termination.
10/10/2013 PEP-SiteFinder , a service to identify candidate interacting residues given a protein structure and a peptide sequence open to all for final tests.
10/07/2013 The BCBB Mobyle Pipeline System (BMPS) is now available here.
09/09/2013 Warning: Sessions are now available.
09/06/2013 Warning: Sessions are currently disabled due to server maintenance. We are sorry for any inconvenience.
09/04/2013 Mobyle@RPBS updated to 1.5.1.
07/04/2013 End of service interruption following fileserver malfunction.
02/08/2013 psipred updated to version 3.3.
02/01/2013 Mobyle@RPBS updated to 1.0.7.
01/21/2013 End of service interruption following major intervention of electric power supply on January 19th.
01/17/2013 GLSearch, a service for fast 3D mining of protein fragments released.
01/03/2013 GLSearch, a service for fast 3D mining of protein fragments now open to all for final tests.
12/18/2012 SAFrag, a service to propose from amino-acid sequence candidate 3D fragments of variable size open to all for final tests.
12/12/2012 SolyPep, a service to assess peptide solubility released with ancillary tools.
12/06/2012 Bug fix and better side chain management for SABBAC full protein structure reconstruction from alpha carbons.
10/10/2012 TEF2 new version of Tightenend End Fragments assignment released.
09/20/2012 Service interruption due to hardware failure. Back to normal on september 21st, 9.30 am.
09/19/2012 TEF2 new version of Tightenend End Fragments assignment opened for tests.
09/19/2012 Yakusa structural similarity search now installed.
03/25/2012 T-Coffee alignment suite installed.
02/22/2012 New version of the HHSearch service based on HHblits.
02/22/2012 HHblits installed (supersedes psiblast for protein similarity search).
02/22/2012 Merge of former Mobyle@RPBS portal (0.97) into this one.
12/19/2011 New version of the HHSearch service.
11/21/2011 Improved PEP-FOLD version now online.
09/18/2011 New computing resource connected to the portal.
09/10/2011 Migration of Structure services from previous v0.97 portal.
Credits
Mobyle is a platform developed jointly by the Institut Pasteur Biology IT Center and the Ressource Parisienne en Bioinformatique Structurale.
More information about this project can be found here.
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